Papers - 2010-2014

Scritto da

2010-2014

 

477. Stano, P.; Kuruma, Y.; Souza, T. P., Luisi, P. L.

Biosynthesis of proteins inside liposomes.

Methods in Molecular Biology 2010, 606, 127-145.

 

478. Mavelli, F.; Stano, P.

Kinetic models for autopoietic chemical systems: role of fluctuations in homeostatic regime. Physical Biology 2010, 7, 016010.

 

479. Walde, P.; Cosentino, K.; Hengel, H.; Stano, P.

Giant Vesicles: Preparations and Applications.

ChemBioChem 2010, 11, 848-865.

 

480. Damiano, L.; Luisi, P. L.

Towards an autopoietic redefinition of life

Orig. Life Evol. Biosph. 2010, 40, 145-149.

 

481. Caschera, F.; Stano, P.; Luisi, P. L.

Reactivity and fusion between cationic vesicles and fatty acid anionic vesicles.

Journal Colloid Interface Science 2010, 345, 561-565.

 

482. Stano, P.; Luisi, P. L.

Achievements and open questions in the self-reproduction of vesicles and synthetic minimal cells.

ChemComm 2010, 46, 3639-3653.

 

483. Stano, P.

Synthetic biology of minimal living cells: primitive cell models and semi-synthetic cells

Systems and Synthetic Biology 2010, 4, 149-156.

 

484. Bersini, H.; Stano, P.; Luisi, P. L.; Bedau, M. (Guest Editors)

Philosophical and scientific perspectives on emergence (Special Issue: International School on Complexity – Emergence in the physical and biological world: a notion in search of clarification).

Synthese 2012, Volume 185, Pp. 165-317.

 

485. Ruiz-Mirazo, K.; Luisi, P. L. (Eds.)

Special Issue: Open Questions on the Origins of Life 2009

Origins of Life and Evolution of Biospheres, Volume 40, Nos. 4-5; October 2010; pp. 353-497.

 

486. Ruiz-Mirazo, K.; Luisi, P. L.

Open Questions on the Origins of Life: Introduction to the Special Issue

Origins of Life and Evolution of Biospheres 2010, 40, 353-355.

 

487. Luisi, P. L.

Contingency and Determinism in the Origin of Life – and Elsewhere

Origins of Life and Evolution of Biospheres 2010, 40, 355-361.

 

488. Stano, P.

Minimal and primitive cells in origins of life, systems chemistry and synthetic biology.

Orig. Life Evol. Biosphere 2010, 40, 452-457.

 

489. Mavelli, F.; Della Gatta, P.; Cassidei, L.; Luisi, P. L.

Could the Ribocell be a Feasible Proto-cell Model?

Origins of Life and Evolution of Biospheres 2010, 40, 459-464.

 

490. Luisi, P. L.

On the Minimal Cell

Origins of Life and Evolution of Biospheres 2010, 40, 464-466.

 

491. Luisi, P. L., Ferri, F.; Stano, P.

Approaches to semi-synthetic minimal cells: a review. (Reprinted).

In: The Nature of Life: Classical and Contemporary Perspectives, M. Bedau and C. Cleland (eds.). Cambridge University Press, Cambridge, 2010. Pp. 272-288.

 

492. Stano, P.; Luisi, P. L.

Reactions in Liposomes

In: Molecular Encapsulation: Organic Reactions in Constrained Systems, U. H. Brinker and J.-L. Mieusset (eds.) Wiley, Chichester, 2010. Pp. 455-491.

 

493. Luisi, P. L.; Allegretti, M.; Souza, T.; Steineger, F.; Fahr, A.; Stano, P.

Spontaneous protein crowding in liposomes: A new vista for the origin of cellular metabolism.

ChemBiochem 2010, 11, 1989-1992.

 

494. Stano, P.; Luisi, P. L.

Costruire une cellule de toutes pièces.

La Recherche 2010, 445, 48-51.

 

495. Stano, P.; Luisi, P. L.

Chemical approaches to synthetic biology: From vesicles self-reproduction to semi-synthetic minimal cells.

Artificial Life XII. Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems. MIT press, Cambridge (MA), 2010. Pp. 147-153.

 

 

498. Luisi, P. L.; Stano, P. (Eds.)

The minimal cell. The Biophysics of Cell Compartment and the Origin of Cell Functionality

Springer, Dordrecht 2011.

 

499. Luisi, P. L.

Preface.

In: “The minimal cell. The Biophysics of Cell Compartment and the Origin of Cell Functionality”, P. L. Luisi; P. Stano (Eds.), Springer, Dordrecht, 2011. Pp. v-vii.

 

500. Stano, P.; Souza, T. P.; Allegretti, M.; Kuruma, Y.; Luisi, P. L.

New and unexpected insights on the formation of protocells from a synthetic biology approach: The case of entrapment of biomacromolecules and protein synthesis inside vesicles.

In: “The minimal cell. The Biophysics of Cell Compartment and the Origin of Cell Functionality”, P. L. Luisi; P. Stano (Eds.), Springer, Dordrecht, 2011. Pp. 195-216.

 

501. Luisi, P. L.; Chiarabelli, C. (Eds.)

Chemical Synthetic Biology.

Wiley, Chichester, 2011.

 

502. Luisi, P. L.

Introduction.

In: “Chemical Synthetic Biology” P. L. Luisi, C. Chiarabelli (Eds.), Wiley, Chichester, 2011. Pp. 1-4.

 

503. De Lucrezia, D.; Anella, F.; Chiarabelli, C.; Luisi, P. L.

Never-Born RNAs: Versatile Modules for Chemical Synthetic Biology.

In: “Chemical Synthetic Biology” P. L. Luisi, C. Chiarabelli (Eds.), Wiley, Chichester, 2011. Pp. 47-68.

 

504. Chiarabelli, C.; Portela-Pallares, C.; Quintarelli, A.

Searching for de novo Totally Random Amino Acid Sequences.

In: “Chemical Synthetic Biology” P. L. Luisi, C. Chiarabelli (Eds.), Wiley, Chichester, 2011. Pp. 155-174.

 

505. Stano, P.; Ferri, F.; Luisi, P. L.

Semi-Synthetic Minimal Living Cells.

In: “Chemical Synthetic Biology” P. L. Luisi, C. Chiarabelli (Eds.), Wiley, Chichester, 2011. Pp. 247-286.

 

506. Luisi, P. L.

The Synthetic Approach in Biology: Epistemological Notes for Synthetic Biology.

In: “Chemical Synthetic Biology” P. L. Luisi, C. Chiarabelli (Eds.), Wiley, Chichester, 2011. Pp. 343-362.

 

508. Stano, P., Luisi, P. L.

On the construction of minimal cell models in synthetic biology and origins of life studies.

In: “Design and Analysis of Biomolecular Circuits: Engineering Approaches to Systems and Synthetic Biology”, H. Koeppl; G. Setti; M. Di Bernardo; D. Densmore (Eds.), Springer, Dordrecht, 2011. Pp. 337-368.

 

509. Stano, P.

Minimal cells: Relevance and interplay of physical and biochemical factors.

Biotechnology Journal 2011, 6, 850-859.

 

510. Adamala, K.; Luisi, P. L.

Experimental systems to explore life origin: perspectives for understanding primitive mechanisms of cell division.

In: Cell Cycle in Development. Results and Problems in Cell Differentiation; J. Z. Kubiak (Ed.) Springer-Verlag; Berlin Heidelberg 2011, 53, 1-9.

 

511. Stano, P.; Carrara, P.; Souza, T., Luisi, P. L.

An update on the minimal cell project: From the physics of solute encapsulation to the experimental modeling of cell communities.

In: “Advances in Artificial Life, ECAL 2011: Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems”, T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo and R. Doursat (Eds.), MIT Press, Cambridge (MA), 2011. Pp. 779-780.

 

512. Stano, P.

Advances in minimal cell models: A new approach to synthetic biology and origin of life.

In “Progress in Molecular and Environmental Bioengineering – From Analysis and Modeling to Technology Applications” A. Carpi (Ed.), Intech - Open Access Publisher, Rijeka, Croatia, 2011. Pp. 23-44.

 

513. Souza, T.; Steiniger, F.; Stano, P.; Fahr, A., Luisi, P. L.

Spontaneous crowding of ribosomes and proteins inside vesicles: A possible mechanism for the origin of cell metabolism.

ChemBioChem 2011, 12, 2325-2330.

 

514. Anella, F.; Chiarabelli, C.; De Lucrezia, D.; Luisi, P. L.

Stability Studies on Random Folded RNAs (“Never Born RNAs”), Implications for the RNAWorld.

Chemistry & Biodiversity 2011, 8, 1422-1432.

 

515. Luisi, P. L.; Stano, P.

Minimal cell mimicry.

Nature Chemistry 2011, 3, 755-756.

 

516. Stano, P.; Carrara, P.; Kuruma, Y.; Souza, T.; Luisi, P. L.

Compartmentalized reactions as a case of soft-matter biotechnology: Synthesis of proteins and nucleic acids inside lipid vesicles.

Journal of Material Chemistry 2011, 21, 18887-18902.

 

517. Bitbol, M.; Luisi, P. L.

Science and the self-referentiality of consciousness.

Journal of Cosmology 2011, 14, 438-454.

 

518. Stano, P.; Kuruma, Y.; Souza, T.; Carrara, P., Luisi, P. L.

Synthetic Biology and the Minimal Cell Project.

In: “4th European Conference on Chemistry for Life Sciences – Budapest, Hungary, August 31 – September 3, 2011”, M. Kiss, A. Perczel (Eds.), Medimond, Pianoro (Italy), 2011. Pp. 109-112.

 

519. Luisi, P. L.

My encounters with Francisco Varela.

Systems Research and Behavioral Science 2011, 28, 689-695.

 

521. Stano, P.

Autopoietic self-reproduction as a distinctive feature of structural and dynamic organization in microcompartment systems: From self-assembled micelles to synthetic cells.

In: “Self-Healing at the Nanoscale: Mechanisms and Key Concepts of Natural and Artificial Systems”, V. Amendola, M. Meneghetti (Eds.), CRC Press Taylor & Francis Group, Boca Raton, 2012. Pp. 333-356.

 

522. Lazzerini-Ospri, L.; Stano, P.; Luisi, P. L.; Marangoni, R.

Characterization of the emergent properties of a synthetic quasi-cellular system.

BMC Bioinformatics, 2012 13, S9.

 

523. Stano, P.; Rampioni, G.; Damiano, F.; D’Angelo, F.; Carrara, P.; Leoni, L.; Luisi, P. L.

Experimental perspectives for a chemical communication between synthetic and natural cells.

Proceedings of the Italian Workshop on Artificial Life and Evolutionary Computation WIVACE (Parma, 20-21 February 2012); ISBN 978-88-903581-2-8 (Published on CD), S. Cagnoni, M. Mirolli, M. Villani (Eds.), 2012, Pp. 1-12.

 

524. Chiarabelli, C.; Stano, P., Anella, F., Carrara, P., Luisi, P. L.

Approaches to chemical synthetic biology.

FEBS Letters 2012, 586, 2138-2145.

 

525. Stano, P.; Rampioni, G.; Carrara, P.; Damiano, L.; Leoni, L.; Luisi, P. L.

Semi-synthetic minimal cells as a tool for biochemical ICT.

Biosystems 2012, 109, 24-34.

 

484. Bersini, H.; Stano, P.; Luisi, P. L.; Bedau, M. (Guest Editors)

Philosophical and scientific perspectives on emergence (Special Issue: International School on Complexity – Emergence in the physical and biological world: a notion in search of clarification).

Synthese 2012, Volume 185, Pp. 165-317.

 

526. Bersini, H.; Stano, P.; Luisi, P. L.; Bedau, M.

Philosophical and scientific perspectives on emergence.

Synthese 2012, 185, 165-169.

 

528. Carrara, P.; Stano, P.; Luisi, P. L.

Giant vesicles ‘colonies’: a model for primitive cell communities.

ChemBioChem 2012, 13, 1497-1502.

 

582bis: Luisi, P.L.

A new start from ground zero?

in Origin of life and Evolution of biosphere 2015, 44 ,303-306

 

529. Maturana, H. R.; Bitbol, M.; Luisi, P. L.

The transcendence of the observer. Discussions at the conference “The Ethical Meaning of Francisco Varela's Thought”

Constructivist Foundations 2012, 7, 174-179.

 

530. Luisi, P. L.

The synthetic approach in biology: epistemic notes for synthetic biology

In Origin(s) of Design in Nature – A fresh, interdisciplinary look at how design emerges in complex systems, especially life, L. Swan, R. Gordon, J. Seckbach (Eds.), Springer, Dordrecht 2012 pp. 525-537.

 

532. Raine, D., Luisi, P. L.

Open Questions on the Origin of Life (OQOL)

Orig. Life Evol. Biosph. 2012, 42, 379-383.

 

533. Souza, T.; Stano, P.; Steiniger, F.; D'Aguanno, E.; Altamura, E.; Fahr, A.; Luisi, P. L.

Encapsulation of Ferritin, Ribosomes, and Ribo-Peptidic Complexes Inside Liposomes: Insights Into the Origin of Metabolism.

Orig. Life Evol. Biosph. 2012, 42, 421-428.

 

534. Lucantoni, M.; Luisi, P. L.

On the Universality of the Living: A Few Epistemological Notes.

Orig. Life Evol. Biosph. 2012, 42, 399-401.

 

535. Chessari, S.; Luisi, P. L.

On evidence: The lack of evidence for prebiotic macromolecular synthesis.

Orig. Life Evol. Biosph. 2012, 42, 411-415.

 

536. Luisi, P. L.

An open question on the origin of life: the first forms of metabolism.

Chemistry & Biodiversity 2012, 9, 2635-2647.

 

537. Wieczorek, R.; Doerr, M.; Chotera, A.; Luisi, P. L.; Monnard, P. A.

Formation of RNA phosphodiester bond by histidine-containing dipeptides

ChemBioChem 2012, 14, 217-223.

 

538. Stano, P.; Luisi, P. L.

Semi-synthetic minimal cells: Origin and recent developments.

Curr. Opin. Biotech. 2013, 24, 633-638.

 

539. Stano, P.; Luisi, P. L.

Construire une cellule de toutes pieces.

Les Dossiers de La Recherche 2013, 2, 54-57.

 

540. Calviello, L.; Stano, P.; Mavelli, F.; Luisi, P. L.; Marangoni, R.

Quasi-cellular systems: stochastic simulation analysis at nanoscale range.

BMC Bioinformatics 2013, 14(Suppl. 7), S7.

 

541. Stano, P.; Souza, T. P.; Kuruma, Y.; Carrara, P.; Luisi, P. L.

Semi-synthetic minimal cells: biochemical, physical and technological aspects.

In: Synthetic Biology: Tools and Applications. H. Zhao (Ed.), Academic Press-Elsevier, Amsterdam, 2013. Pp. 261-276.

 

544. Mavelli, F.; Caputo, M.; Altamura, E.; Stano, P.

Stochastic simulations of minimal cell model systems.

In: Proceedings of the 12th Joint European Thermodynamics Conference, JETC 2013, M. Pilotelli and G.P. Beretta (Eds), ISBN 978-88-89252-22-2, Snoopy, Brescia, Italy, 2013, pp. 73-81.

 

545. Stano, P.; D’Aguanno, E.; Carrara, P.; Fahr, A.; Luisi, P. L.

Recent advancements in synthetic cells research.

In: Advances in Artificial Life, ECAL 2013: Proceedings of the Twelfth European Conference on the Synthesis and Simulation of Living Systems (2-6 September 2013, Taormina, Italy); P. Liò, O. Miglino, G. Nicosia, S. Nolfi, M. Pavone (Eds.), MIT Press (e-book, ISBN 978-0-262-31709-2) 2013, pp. 1160-1161.

 

549. Chiarabelli, C.; Stano, P.; Luisi, P. L.

Chemical synthetic biology: a mini-review.

Frontiers in Microbiotechnology, Ecotoxicology and Bioremediation 2013, 4, 285.

 

550. Stano, P.; D’Aguanno, E.; Bolz, J.; Fahr, A.; Luisi, P. L.

A remarkable self-organization process as the origin of primitive functional cells.

Angewandte Chemie International Edition 2013, 52, 13397-13400.

 

550b. Luisi P. L.

The origins of life at a Buddhist monastery in Bhutan

Rendiconti Lincei – Scienze Fisiche e Naturali 2013, 24, 387-400.

 

551. Stano, P.; Rampioni, G.; Damiano, L.; D’Angelo, F.; Carrara, P.; Leoni, L.; Luisi, P. L.

Towards the engineering of chemical communication between semi-synthetic and natural cells.

In: “Evolution, Complexity and Artificial Life”, S. Cagnoni, M. Mirolli, M. Villani (Eds.), Springer, Dordrecht, 2014, pp. 91-104.

 

552. Adamala, K., Anella, F.; Wieczorek, R.; Stano, P.; Chiarabelli, C.; Luisi, P. L.

Open questions in origin of life: experimental studies on the origin of nucleic acids and proteins with specific and functional sequences by a chemical synthetic biology approach.

Computational and Structural Biotechnology Journal 2014, 9, e201402004.

 

555. Chiarabelli, C.; Stano, P.; Luisi, P. L.

Chemical Synthetic Biology projects: Never Born Biopolymers and synthetic cells.

In: Synthetic Biology: Volume 1. M. Ryadnov, L. Brunsveld, H. Suga (Eds.), Royal Society of Chemistry 2014, 1, 292-329.

 

557. Luisi, P. L.

Prebiotic reaction network?

Mol. Syst. Biol. 2014, 10, 729.

 

558. Chiarabelli, C.; Luisi, P. L.

Chemical synthetic biology

Science Progress 2014, 97, 48-61.

 

562. Rampioni, G.; Mavelli, F.; Damiano, L., D’Angelo, F.; Messina, M.; Leoni, L.; Stano, P.

A synthetic biology approach to bio-chem-ICT: first moves towards chemical communication between synthetic and natural cells.

Natural Computing 2014, 13, 333-349.

 

563.  Walde, P.; Umakoshi, H.; Stano, P.; Mavelli, F.

Emergent properties arising from the assembly of amphiphiles. Artificial vesicle membranes as reaction promoters and regulators.

Chemical Communications 2014, 50, 10177-10197.

 

564. Stano, P.; Wodlei, F.; Carrara, P.; Ristori, S.; Marchettini, N.; Rossi, F.

Approaches to molecular communication between synthetic compartments based on encapsulated chemical oscillators.

In: Advances in Artificial Life and Evolutionary Computation, C. Pizzuti, G. Spezzano (Eds.), Communications in Computer and Information Science 2014, 445, 58-74.

 

565. Mavelli, F.; Rampioni, G.; Damiano, L.; Messina, M.; Leoni, L.; Stano, P.

Molecular communication technology: general considerations on the use of synthetic cells and some hints from in silico modeling.

In: Advances in Artificial Life and Evolutionary Computation, C. Pizzuti, G. Spezzano (Eds.), Communications in Computer and Information Science 2014, 445, 169-189.

 

566. Luisi, P. L.; Chiarabelli, C.; Stano, P.

Editorial  overview:  Synthetic  Biology.

Current Opinion in Chemical Biology 2014, 22, v-vii.

 

567. Souza, T.; Fahr, A.; Luisi, P. L.; Stano, P.

Spontaneous encapsulation and concentration of biological macromolecules in liposomes: an intriguing phenomenon and its relevance in origins of life.

Journal of Molecular Evolution 2014, 79, 179-192.

 

568. Luisi, P. L.; Kuruma, Y.

Open Questions on the Origin of Life (OQOL)—Introduction to the Special Issue. A workshop in association with the Origins 2014 meeting.

Origins of Life and Evolution of the Biosphere 2014, 44, 267-268.

 

569. Luisi, P. L.

A New Start from Ground Zero?

Origins of Life and Evolution of the Biosphere 2014, 44, 303-306.

 

570. Luisi, P. L.; Stano, P.; Souza, T.

Spontaneous overcrowding in liposomes as possible origin of metabolism.

Origins of Life and Evolution of the Biosphere 2014, 44, 313-317.

 

571. Luisi, P. L.

The minimal autopoietic unit.

Origins of Life and Evolution of the Biosphere 2014, 44, 335-338.

Pier Luigi Luisi

Pier Luigi received his scientific education at the Scuola Normale Superiore in Pisa, Italy. In 1970, he became professor at the Institut für Polymere at the ETH-Zürich and since 2006 he is part of the biology department of the University of Roma Tre. As a biochemist, he pioneered an active research in the self-organization of synthetic and biological systems, the origin of life, and semi-synthetic cellular systems (the so-called "mininal life"). Interested in the interface between science and humanities, in 1985 he founded Cortona week, legacy to this Todi-week, and participated, in 1987, to the foundation of Mind and Life in Dharamsala, India, with Francisco Varela and the Dalai Lama.

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